miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|61960327|gb|DN655078.1|DN655078 CTGTGGTTAGGTTGAGGAACAGAGGAGATAAGTGGCGTGTTCGGAGTGCATAGAGATGGACAGATTCACCCGGGGGGGGG
CGGGTGGGATTATTGCCCTGTGACAACCTCACACACACACGCACACACACACACACACACACACACACACACACAGTGAA
TACACACGTCCACCCAGCATGAGAAGGACAGAAGAGGAAAGCTGCAGAGAGAGAAGGTTTCTTCCCCCCCCGGGCTGGTG
GAGGAGTGTGTCTTTGTGTGTGTATGTGTGTGTGTGTTCATGTGTGTGTGTGTGTGTGCGCCCGTGGGATATATGTCCAA
AAAATAGTCCAAGCTCTGATTTCTGGTTTGCATCTCCATGTGTGGAGGCTTCACATGCGCGAGGACGACGCCAGCTCGTA
GAACAAGACGTAGGCGTCGCTGCTGCGCACTTGGCTGGAGGACATTGGCGTTACTCTGGAGTCGTTGAAGGTGTACCACT
CCCCCGAGCTGGGGCTGCGGCAGTAGGCCGTGTAGTGACCCCCCATGGTGGTGCCTGAGTGGTTGGACACTGCGTACAGG
TTGTACACCGCGTCTATGCTGTGTTGGGAGGCAAACTCCCGCAGGTCCAGGTCTTTCATGGGGAAGTTCACGAAGGTGGA
CAGTTTGCTGGTTCTTCGCGCCTCAGAGAAGCGCTTGAGGTGCAGCACTAGGATCTTGGGGAACTTCTGTATGGTGAACT
TCTTGGTGCATCTCCTGCGAGCTTTACACCTGTAGCACGTCGGCTTCTCGTCTCCGTCGAGGACGTCTTCCTTGGTGAAG
AGCCGCATGCAGTCCATCAGGCTGACGTCACCGTAACCCTTGGCGATGGGGAGAGAAAGGTCCCAGAAGGGGTCGAACAC
GGTGGAGCAGAACCCACAGTGGCTGCAGGTCAGAGAACTCTTCAGCTGCCCCACGAACACATCAACGATCTTGCTGTCTT
CTCTCTCCAGATATTTACTCCACATCTTCTTCCCTTTTCTCTCATTCGGGAAGGTGGTCAAAGTCCTCCCCCGGCGCCCC
TCGGCCCTGACGCTGAACCGGTTTGACCCTGTTTGGGCAATCCGTTCAGCAGGGAAGCGCAGGAACCTCCTGAACGGTCC
TGATGGTTGGTACCCCAAAATTTTGGAACCGTATCCTCGGGATCTGCGTTTTGAAAA




Most similar to sp|O88623|UBP2_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O88623|UBP2_MOUSE Ubiquitin carboxyl-terminal hydrolase 2 OS=Mus
            musculus GN=Usp2 PE=1 SV=2
          Length = 613

 Score =  371 bits (952), Expect = e-102
 Identities = 187/269 (69%), Positives = 222/269 (82%), Gaps = 3/269 (1%)
 Frame = -1

Query: 1171 KRRSRGYGSKILGYQPSGPFRRFLRFPAERIAQTGSNRFSVRAEGRRGRTLTTFPNERKG 992
            K + + Y  + +GY      + FLRF  + +     NR + R +     TL   P+E KG
Sbjct: 348  KTQIQRYAPRFMGYNQQDA-QEFLRFLLDGL-HNEVNRVAARPKASP-ETLDHLPDEEKG 404

Query: 991  KKMWSKYLEREDSKIVDVFVGQLKSSLTCSHCGFCSTVFDPFWDLSLPIAK-GYGDVSLM 815
            ++MW KYLEREDS+I D+FVGQLKSSLTC+ CG+CSTVFDPFWDLSLPIAK GY +V+LM
Sbjct: 405  RQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLM 464

Query: 814  DCMRLFTKEDVLDGDEKPTCYRCKARRRCTKKFTIQKFPKILVLHLKRFSEAR-RTSKLS 638
            DCMRLFTKED+LDGDEKPTC RC+AR+RC KKF++Q+FPKILVLHLKRFSE+R RTSKL+
Sbjct: 465  DCMRLFTKEDILDGDEKPTCCRCRARKRCIKKFSVQRFPKILVLHLKRFSESRIRTSKLT 524

Query: 637  TFVNFPMKDLDLREFASQHSIDAVYNLYAVSNHSGTTMGGHYTAYCRSPSSGEWYTFNDS 458
            TFVNFP++DLDLREFAS+++  AVYNLYAVSNHSGTTMGGHYTAYCRSP +GEW+TFNDS
Sbjct: 525  TFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPVTGEWHTFNDS 584

Query: 457  RVTPMSSSQVRSSDAYVLFYELAS-SSRM 374
             VTPMSSSQVR+SDAY+LFYELAS  SRM
Sbjct: 585  SVTPMSSSQVRTSDAYLLFYELASPPSRM 613